6ZG9

Structure of M1-StaR-T4L in complex with GSK1034702 at 2.5A


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Free: 0.242 
  • R-Value Work: 0.203 
  • R-Value Observed: 0.205 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.4 of the entry. See complete history


Literature

From structure to clinic: Design of a muscarinic M1 receptor agonist with potential to treatment of Alzheimer's disease.

Brown, A.J.H.Bradley, S.J.Marshall, F.H.Brown, G.A.Bennett, K.A.Brown, J.Cansfield, J.E.Cross, D.M.de Graaf, C.Hudson, B.D.Dwomoh, L.Dias, J.M.Errey, J.C.Hurrell, E.Liptrot, J.Mattedi, G.Molloy, C.Nathan, P.J.Okrasa, K.Osborne, G.Patel, J.C.Pickworth, M.Robertson, N.Shahabi, S.Bundgaard, C.Phillips, K.Broad, L.M.Goonawardena, A.V.Morairty, S.R.Browning, M.Perini, F.Dawson, G.R.Deakin, J.F.W.Smith, R.T.Sexton, P.M.Warneck, J.Vinson, M.Tasker, T.Tehan, B.G.Teobald, B.Christopoulos, A.Langmead, C.J.Jazayeri, A.Cooke, R.M.Rucktooa, P.Congreve, M.S.Weir, M.Tobin, A.B.

(2021) Cell 184: 5886

  • DOI: https://doi.org/10.1016/j.cell.2021.11.001
  • Primary Citation of Related Structures:  
    6ZFZ, 6ZG4, 6ZG9

  • PubMed Abstract: 

    Current therapies for Alzheimer's disease seek to correct for defective cholinergic transmission by preventing the breakdown of acetylcholine through inhibition of acetylcholinesterase, these however have limited clinical efficacy. An alternative approach is to directly activate cholinergic receptors responsible for learning and memory. The M1-muscarinic acetylcholine (M1) receptor is the target of choice but has been hampered by adverse effects. Here we aimed to design the drug properties needed for a well-tolerated M1-agonist with the potential to alleviate cognitive loss by taking a stepwise translational approach from atomic structure, cell/tissue-based assays, evaluation in preclinical species, clinical safety testing, and finally establishing activity in memory centers in humans. Through this approach, we rationally designed the optimal properties, including selectivity and partial agonism, into HTL9936-a potential candidate for the treatment of memory loss in Alzheimer's disease. More broadly, this demonstrates a strategy for targeting difficult GPCR targets from structure to clinic.


  • Organizational Affiliation

    Sosei-Heptares, Steinmetz Building, Granta Park, Cambridge, CB21 6DG, UK.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Muscarinic acetylcholine receptor M1,Endolysin,Muscarinic acetylcholine receptor M1455Homo sapiensTequatrovirus T4Mutation(s): 15 
Gene Names: CHRM1
EC: 3.2.1.17
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for P11229 (Homo sapiens)
Explore P11229 
Go to UniProtKB:  P11229
PHAROS:  P11229
GTEx:  ENSG00000168539 
Find proteins for P00720 (Enterobacteria phage T4)
Explore P00720 
Go to UniProtKB:  P00720
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupsP00720P11229
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 4 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
QK2 (Subject of Investigation/LOI)
Query on QK2

Download Ideal Coordinates CCD File 
B [auth A]7-fluoranyl-5-methyl-3-[1-(oxan-4-yl)piperidin-4-yl]-1~{H}-benzimidazol-2-one
C18 H24 F N3 O2
KRRSQJOVDWYKHH-UHFFFAOYSA-N
OLA
Query on OLA

Download Ideal Coordinates CCD File 
D [auth A]
E [auth A]
F [auth A]
G [auth A]
H [auth A]
D [auth A],
E [auth A],
F [auth A],
G [auth A],
H [auth A],
I [auth A]
OLEIC ACID
C18 H34 O2
ZQPPMHVWECSIRJ-KTKRTIGZSA-N
EPE
Query on EPE

Download Ideal Coordinates CCD File 
C [auth A]4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
C8 H18 N2 O4 S
JKMHFZQWWAIEOD-UHFFFAOYSA-N
PO4
Query on PO4

Download Ideal Coordinates CCD File 
J [auth A]PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Free: 0.242 
  • R-Value Work: 0.203 
  • R-Value Observed: 0.205 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 62.363α = 90
b = 66.571β = 90
c = 153.102γ = 90
Software Package:
Software NamePurpose
BUSTERrefinement
PDB_EXTRACTdata extraction
MOSFLMdata reduction
Aimlessdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2021-10-06
    Type: Initial release
  • Version 1.1: 2021-12-01
    Changes: Data collection, Database references
  • Version 1.2: 2021-12-08
    Changes: Database references
  • Version 1.3: 2024-01-24
    Changes: Data collection, Refinement description
  • Version 1.4: 2024-10-23
    Changes: Structure summary